[SOLVED][Drupal Colorbox] Colorbox overlay displayed behind embedded flash media
Many Drupal users noticed that the Colorbox overlay was being displayed behind embedded flash media. The Colorbox popup seemed to be displayed in the second layer behind the embedded flash media. If you are facing the same issue in Colorbox in your Drupal site then read on to find out the solution.
This is not an issue with Colorbox but rather an issue with the flash media itself. This can be solved by setting "wmode" to "transparent" which can be done in the embed code itself.
Hope that helps.
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Reference: http://drupal.org/node/1301184